Here is a list of all files with brief descriptions:

cmake_hdf5_test.c
cmake_hdf5_test.cxx
CMakeCCompilerId.c
CMakeCXXCompilerId.cpp
cycamore.h
cycamore_unit_test_driver.cc
_tmp_build/cycamore/cycamore_version.h
src/cycamore_version.h
DartConfiguration.tcl
_tmp_build/cycamore/deploy_inst.cc
src/deploy_inst.cc
_tmp_build/cycamore/deploy_inst.h
src/deploy_inst.h
_tmp_build/cycamore/deploy_inst_tests.cc
src/deploy_inst_tests.cc
_tmp_build/cycamore/enrichment.cc
src/enrichment.cc
_tmp_build/cycamore/enrichment.h
src/enrichment.h
_tmp_build/cycamore/enrichment_tests.cc
src/enrichment_tests.cc
_tmp_build/cycamore/enrichment_tests.h
src/enrichment_tests.h
feature_tests.c
feature_tests.cxx
_tmp_build/cycamore/fuel_fab.cc
src/fuel_fab.cc
_tmp_build/cycamore/fuel_fab.h
src/fuel_fab.h
_tmp_build/cycamore/fuel_fab_tests.cc
src/fuel_fab_tests.cc
generate_test_macros.py
_tmp_build/cycamore/growth_region.cc
src/growth_region.cc
_tmp_build/cycamore/growth_region.h
src/growth_region.h
_tmp_build/cycamore/growth_region_tests.cc
src/growth_region_tests.cc
_tmp_build/cycamore/growth_region_tests.h
src/growth_region_tests.h
helper.py
install.py
_tmp_build/cycamore/manager_inst.cc
src/manager_inst.cc
_tmp_build/cycamore/manager_inst.h
src/manager_inst.h
_tmp_build/cycamore/manager_inst_tests.cc
src/manager_inst_tests.cc
_tmp_build/cycamore/manager_inst_tests.h
src/manager_inst_tests.h
_tmp_build/cycamore/mixer.cc
src/mixer.cc
_tmp_build/cycamore/mixer.h
src/mixer.h
_tmp_build/cycamore/mixer_tests.cc
src/mixer_tests.cc
print_regs.py
_tmp_build/cycamore/reactor.cc
src/reactor.cc
_tmp_build/cycamore/reactor.h
src/reactor.h
_tmp_build/cycamore/reactor_tests.cc
src/reactor_tests.cc
_tmp_build/bin/run_inputs.py
tests/run_inputs.py
_tmp_build/cycamore/separations.cc
src/separations.cc
_tmp_build/cycamore/separations.h
src/separations.h
_tmp_build/cycamore/separations_tests.cc
src/separations_tests.cc
_tmp_build/cycamore/sink.cc
src/sink.cc
_tmp_build/cycamore/sink.h
src/sink.h
_tmp_build/cycamore/sink_tests.cc
src/sink_tests.cc
_tmp_build/cycamore/sink_tests.h
src/sink_tests.h
_tmp_build/cycamore/source.cc
src/source.cc
_tmp_build/cycamore/source.h
src/source.h
_tmp_build/cycamore/source_tests.cc
src/source_tests.cc
_tmp_build/cycamore/source_tests.h
src/source_tests.h
_tmp_build/cycamore/storage.cc
src/storage.cc
_tmp_build/cycamore/storage.h
src/storage.h
_tmp_build/cycamore/storage_tests.cc
src/storage_tests.cc
_tmp_build/cycamore/storage_tests.h
src/storage_tests.h
test_regression.py
test_run_inputs.py